SNP Profiles of EET 399 [ECU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	TT	CC	GG	TT	AA	AC	CT	AG	GG	GG	TT	AA
1._RUQ_745	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
2._EET_399_[ECU]	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
3._EET_399_[ECU]	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
4._EET_399_[ECU]	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
5._EET_399_[ECU]	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
6._EET_399_[ECU]	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
7._RUQ_745	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
8._EET_399_[ECU]	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
9._GC-04-047-3-11	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
10._GC-04-047-3-11	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
11._GC-04-047-3-11	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
12._GC-04-047-3-11	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
13._GC-04-047-3-11	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
14._GC-04-047-3-11	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
15._GC-04-047-3-11	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
16._RUQ_745	_	_	_	_	_	_	_	AC	_	_	_	GG	_	_
17._RUQ_745	TT	AC	CC	AC	GG	GG	TT	AC	CT	AG	TT	AA	TT	AA
18._EET_399_[ECU]	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	CC	AA	CT	AC	AA	GG	AA	AC	CC	TT	AG	CC
1._RUQ_745	AG	_	_	_	_	AC	_	GG	_	AC	CC	_	_	_
2._EET_399_[ECU]	_	_	_	_	_	AC	_	GG	_	AC	_	_	_	_
3._EET_399_[ECU]	_	_	_	_	_	AC	_	GG	_	AC	_	_	_	_
4._EET_399_[ECU]	_	_	_	_	_	AC	_	GG	_	AC	_	_	_	_
5._EET_399_[ECU]	_	_	_	_	_	AC	_	GG	_	AC	_	_	_	_
6._EET_399_[ECU]	_	_	_	_	_	AC	_	GG	_	AC	_	_	_	_
7._RUQ_745	_	_	_	_	_	AC	_	GG	_	AC	_	_	_	_
8._EET_399_[ECU]	_	_	_	_	_	_	_	GG	_	AC	_	_	_	_
9._GC-04-047-3-11	AG	_	_	_	_	AC	_	GG	_	AC	CC	_	_	_
10._GC-04-047-3-11	AG	_	_	_	_	AC	_	GG	_	AC	CC	_	_	_
11._GC-04-047-3-11	AG	_	_	_	_	AC	_	GG	_	AC	CC	_	_	_
12._GC-04-047-3-11	AG	_	_	_	_	AC	_	GG	_	AC	CC	_	_	_
13._GC-04-047-3-11	AG	_	_	_	_	AC	_	GG	_	AC	CC	_	_	_
14._GC-04-047-3-11	AG	_	_	_	_	AC	_	GG	_	AC	CC	_	_	_
15._GC-04-047-3-11	AG	_	_	_	_	_	_	GG	_	AC	CC	_	_	_
16._RUQ_745	AG	_	_	_	_	AC	_	GG	_	AC	GG	_	_	_
17._RUQ_745	AA	CC	CT	AC	TT	CC	AA	CC	AA	CC	CT	TT	AG	CC
18._EET_399_[ECU]	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	CG	CT	GT	AG	CT	TT	AC	TT	CT	CG	GG	CG	AA
1._RUQ_745	_	_	CT	GT	AG	_	_	AC	_	_	CG	-	_	AA
2._EET_399_[ECU]	AA	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
3._EET_399_[ECU]	AA	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
4._EET_399_[ECU]	AA	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
5._EET_399_[ECU]	AA	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
6._EET_399_[ECU]	AA	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
7._RUQ_745	AA	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
8._EET_399_[ECU]	AA	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
9._GC-04-047-3-11	AA	_	CT	GT	AG	_	_	AC	_	CG	CG	GG	_	AA
10._GC-04-047-3-11	AA	_	CT	GT	AG	_	_	AC	_	CG	CG	GG	_	AA
11._GC-04-047-3-11	AA	_	CT	GT	AG	_	_	AC	_	CG	CG	GG	_	AA
12._GC-04-047-3-11	AA	_	CT	GT	AG	_	_	AC	_	CG	CG	GG	_	AA
13._GC-04-047-3-11	AA	_	CT	GT	AG	_	_	AC	_	CG	CG	GG	_	AA
14._GC-04-047-3-11	AA	_	CT	GT	AG	_	_	AC	_	CG	CG	GG	_	AA
15._GC-04-047-3-11	AA	_	CT	GT	AG	_	_	AC	_	CG	CG	GG	_	AA
16._RUQ_745	_	_	_	AC	AG	_	_	AC	_	CG	CG	GG	_	AA
17._RUQ_745	AG	CC	CT	GG	AG	TT	CT	AA	AA	TT	GG	AA	CG	GG
18._EET_399_[ECU]	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	TT	AA	CC	GG	TT	CC	TT	AA	GG	GG	TT	AG	GG
1._RUQ_745	CC	_	_	_	_	_	_	_	_	GG	_	_	_	_
2._EET_399_[ECU]	_	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
3._EET_399_[ECU]	_	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
4._EET_399_[ECU]	_	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
5._EET_399_[ECU]	_	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
6._EET_399_[ECU]	_	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
7._RUQ_745	_	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
8._EET_399_[ECU]	_	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
9._GC-04-047-3-11	CC	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
10._GC-04-047-3-11	CC	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
11._GC-04-047-3-11	CC	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
12._GC-04-047-3-11	CC	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
13._GC-04-047-3-11	CC	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
14._GC-04-047-3-11	CC	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
15._GC-04-047-3-11	CC	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
16._RUQ_745	_	_	_	_	GG	_	_	_	_	_	_	_	_	_
17._RUQ_745	CT	TT	AA	CC	AA	TT	CT	GT	AC	GT	GT	TT	GG	GG
18._EET_399_[ECU]	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_

	57	58	59
_Input profile	CC	TT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_745	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._EET_399_[ECU]	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._EET_399_[ECU]	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._EET_399_[ECU]	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._EET_399_[ECU]	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._EET_399_[ECU]	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._RUQ_745	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._EET_399_[ECU]	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-04-047-3-11	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-04-047-3-11	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-04-047-3-11	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-04-047-3-11	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-04-047-3-11	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-04-047-3-11	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-04-047-3-11	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._RUQ_745	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._RUQ_745	GG	TT	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._EET_399_[ECU]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: EET_399_[ECU] RUQ_745B

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._EET_399_[ECU] RUQ_745

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._EET_399_[ECU]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4311 8 > FP

Dapeng Zhang, 2016

3._EET_399_[ECU]

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 6 > FP

Dapeng Zhang, 2016

4._EET_399_[ECU]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4311 5 > FP

Dapeng Zhang, 2016

5._EET_399_[ECU]

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 3 > FP

Dapeng Zhang, 2016

6._EET_399_[ECU]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4311 2

Dapeng Zhang, 2016

7._EET_399_[ECU] RUQ_745

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

8._EET_399_[ECU]

identical
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._EET_399_[ECU] GC-04-047-3-11

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

10._EET_399_[ECU] GC-04-047-3-11

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

11._EET_399_[ECU] GC-04-047-3-11

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

12._EET_399_[ECU] GC-04-047-3-11

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

13._EET_399_[ECU] GC-04-047-3-11

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2

14._EET_399_[ECU] GC-04-047-3-11

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

15._EET_399_[ECU] GC-04-047-3-11

95 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

16._EET_399_[ECU] RUQ_745

75 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

17._EET_399_[ECU] RUQ_745

59.3 %
59 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

18._EET_399_[ECU]

53.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 3 > FP

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1253	53	TcSNP1275	54	TcSNP1293	55	TcSNP1401
56	TcSNP1404	57	TcSNP1458	58	TcSNP1524	59	TcSNP1527